PubMed list
2006 | 2005 | 2004 | 2003 | 2002 | 2001 | 2000 | 1999 | 1998 | 1997 & earlier

Beldade, P., S. Rudd, J.D. Gruber, and A.D. Long. 2006. A wing Expressed Sequence Tag resource for Bicyclus anynana butterflies, an evo-devo model. BMC Genomics 7: 130. PubMed | provisional PDF | alignments (708 KB .rar file)

Drapeau, M.D., S.A. Cyran, M.M. Viering, P.K. Geyer, and A.D. Long. 2006. A cis-regulatory sequence within the yellow locus of Drosophila melanogaster required for normal male mating success. Genetics 172: 1009-1030. PubMed | PDF (823 KB)

Beldade, P., P.M. Brakefield, and A.D. Long. 2005. Generating phenotypic variation: prospects from "evo-devo" research on Bicyclus anynana wing patterns. Evolution & Development 7: 101-107. PubMed | PDF (593 KB) | GenBank

Macdonald, S.J., and A.D. Long. 2005. Identifying signatures of selection at the Enhancer of split neurogenic gene complex in Drosophila. Molecular Biology and Evolution 22: 607-619. PubMed | PDF (281 KB) | Supplementary Material (572 KB ZIP) | GenBank

Macdonald, S.J., and A.D. Long. 2005. Prospects for identifying functional variation across the genome. Proceedings of the National Academy of Sciences U.S.A. 102 Suppl 1: 6614-6621. PubMed | PDF (490 KB) | Journal Supporting Information | Supplementary Material (1.9 MB ZIP) | GenBank

Macdonald, S.J., T. Pastinen, and A.D. Long. 2005. The effect of polymorphisms in the Enhancer of split gene complex on bristle number variation in a large wild-caught cohort of Drosophila melanogaster. Genetics 171: 1741-1756. PubMed | PDF (392 KB) | Journal Data Supplement | Supplementary Material (4.0 MB ZIP)

Macdonald, S.J., T. Pastinen, A. Genissel, T. W. Cornforth, and A.D. Long. 2005. A low-cost open-source SNP genotyping platform for association mapping applications. Genome Biology 6: R105. PubMed | PDF (2.2 MB) | Journal Additional Data Files | Supplementary Material (10.6 MB ZIP) | LongLab Genotyping Page | GenBank

Riehle, M.M., A.F. Bennett, and A.D. Long. 2005. Changes in gene expression following high-temperature adaptation in experimentally evolved populations of E. coli. Physiological and Biochemical Zoology 78: 299-315. PubMed | PDF (1,481 KB)

Genissel, A., T. Pastinen, A. Dowell, T.F.C. Mackay, and A.D. Long. 2004. No evidence for an association between common nonsynonymous polymorphisms in Delta and bristle number variation in natural and laboratory populations of Drosophila melanogaster. Genetics 166: 291-306. PubMed | PDF (516 KB) | GenBank1 | GenBank2

Macdonald, S.J., and A.D. Long. 2004. A potential regulatory polymorphism upstream of hairy is not associated with bristle number variation in wild-caught Drosophila. Genetics 167: 2127-2131. PubMed | PDF (76 KB) | Supplementary Material (20 KB ZIP) | GenBank | Faculty of 1000

Cornforth, T.W., and A.D. Long. 2003. Inferences regarding the numbers and locations of QTLs under multiple-QTL models using interval mapping and composite interval mapping. Genetical Research 82: 139-149. PubMed | PDF (180 KB) | Supplementary Info (19.2 MB PDF)

Drapeau, M.D. 2003. A novel hypothesis on the biochemical role of the Drosophila Yellow protein. Biochemical and Biophysical Research Communications 311: 1-3. PubMed | PDF (72 KB) [part of Mark's dissertation work in the LongLab]

Drapeau, M.D., A. Radovic, P.J. Wittkopp, and A.D. Long. 2003. A gene necessary for normal male courtship, yellow, acts downstream of fruitless in the Drosophila melanogaster larval brain. Journal of Neurobiology 55: 53-72. PubMed | PDF (700 KB)

Gaut, B.S., and A.D. Long. 2003. The lowdown on linkage disequilibrium. Plant Cell 15: 1502-1506. PubMed | PDF (140 KB)

Riehle, M.M., A.F. Bennett, R.E. Lenski, and A.D. Long. 2003. Evolutionary changes in heat-inducible gene expression in lines of Escherichia coli adapted to high temperature. Physiological Genomics 14: 47-58. PubMed | PDF (284 KB)

Beldade, P., P.M. Brakefield, and A.D. Long. 2002. Contribution of Distal-less to quantitative variation in butterfly eyespots. Nature 415: 315-318. PubMed | PDF (236 KB) | GenBank

Drapeau, M.D. and A.D. Long. 2002. Bioinformatics and cytogenetics of unusual Drosophila melanogaster X-chromosome morphology. DNA Sequence 13: 241-243. PubMed | PDF (90 KB)

Radovic, A., P.J. Wittkopp, A.D. Long, and M.D. Drapeau. 2002. Immunohistochemical colocalization of Yellow and male-specific Fruitless in Drosophila melanogaster neuroblasts. Biochemical and Biophysical Research Communications 293: 1262-1264. PubMed | PDF (136 KB)

Robin, R., R.F. Lyman, A.D. Long, C.H. Langley, and T.F.C.Mackay. 2002. hairy: a quantitative trait locus for Drosophila sensory bristle number. Genetics 162:155-164. PubMed | PDF (372 KB)

Rose, M.R. and A.D. Long. 2002. Ageing: the many-headed monster. Current Biology 12: R311-312. PubMed | PDF (84 KB)

Rose, M.R., L.D. Mueller, and A.D. Long. 2002. Pharmacology, genomics, and the evolutionary biology of ageing. Free Radical Research 36: 1293-1297. PubMed

Baldi, P. and A.D. Long. 2001. A Bayesian framework for the analysis of microarray expression data: regularized t-test and statistical inferences of gene changes. Bioinformatics 17: 509-519. PubMed | PDF (228 KB) | Cyber-T

Drapeau, M.D. 2001. The family of Yellow-related Drosophila melanogaster proteins.
Biochemical and Biophysical Research Communications 281: 611-613. PubMed | PDF (36 KB) [part of Mark's dissertation work in the LongLab]

Long, A.D., H.J. Mangalam, B.Y.P. Chan, L. Tolleri, G.W. Hatfield, and P. Baldi. 2001. Improved statistical inference from DNA microarray data using analysis of variance and a Bayesian statistical framework. Analysis of global gene expression in Escherichia coli K12. Journal of Biological Chemistry 276: 19937-19944. PubMed | PDF (328 KB)

Riehle, M.M., A.F. Bennett, and A.D. Long. 2001. Genetic architecture of thermal adaptation in Escherichia coli. Proceedings of the National Academy of Sciences U.S.A. 98: 525-530. PubMed | PDF (580 KB)

Tenaillon, M.I., M.C. Sawkins, A.D. Long, R.L. Gaut, J.F. Doebley, and B.S. Gaut. 2001. Patterns of DNA sequence polymorphism along chromosome 1 of maize (Zea mays ssp. mays L.). Proceedings of the National Academy of Sciences U.S.A. 98: 9161-9166. PubMed | PDF (124 KB)

Arfin, S.M., A.D. Long, E.T. Ito, L. Tolleri, M.M. Riehle, E.S. Paegle, and G.W. Hatfield. 2000. Journal of Biological Chemistry 275: 29672-84. PubMed | PDF (396 KB)

Long, A.D., R.F. Lyman, A.H. Morgan, C.H. Langley, and T.F.C. Mackay. 2000. Both naturally occurring insertions of transposable elements and intermediate frequency polymorphisms at the achaete-scute complex are associated with variation in bristle number in Drosophila melanogaster. Genetics 154: 1255-69. PubMed | PDF (240 KB)

Long, A.D., and C.H. Langley. 1999. The power of association studies to detect the contribution of candidate genetic loci to variation in complex traits. Genome Research 9: 720-731. PubMed | PDF (356 KB)

Long, A.D., R.F. Lyman, C.H. Langley, and T.F.C. Mackay. 1998. Two sites in the Delta gene region contribute to naturally occuring variation in bristle number in Drosophila melanogaster. Genetics 149: 999-1017. PubMed | PDF (236 KB)

Long, A.D., M.N. Grote, and C.H. Langley. 1997. Genetic analysis of complex diseases (Technical Comment). Science 275: 1328. PubMed

Long, A.D., S.L. Mullaney, T.F.C Mackay, and C.H. Langley. 1996. Genetic interactions between naturally occurring alleles at quantitative trait loci and mutant alleles at candidate loci affecting bristle number in Drosophila melanogaster. Genetics 144: 1497-1510. PubMed | PDF (2.1 MB)

Long, A.D., S.L. Mullaney, L.A. Reid, J.D, Fry, C.H. Lang Fry, C.H. Langley, and T.F.C. Mackay. 1995. High resolution mapping of genetic factors affecting abdominal bristle number in Drosophila melanogaster. Genetics 139: 1273-1291. PubMed | PDF (1.8 MB)

Long, A.D. and R.S. Singh. 1995. Molecules vs. morphology: The detection of selection acting on morphological characters along a cline in Drosophila melanogaster. Heredity 74: 569-595. PubMed

Aguadé, M., W. Meyers, A.D. Long, and C.H. Langley. 1994. Single-strand conformation polymorphism analysis coupled with DNA sequencing reveals reduced sequence variation in the su(s) and su(w^a) regions of the Drosophila melanogaster X chromosome. Proceedings of the National Academy of Sciences U.S.A. 91: 4658-4662. PubMed | PDF (1.1 MB)

Lai, C., R.F. Lyman, A.D. Long, C.H. Langley, and T.F.C. Mackay. 1994. Naturally occurring variation in bristle number associated with molecular variation at the scabrous locus in Drosophila melanogaster. Science 266: 1697-1702. PubMed | PDF (1.4 MB)

Long, A.D. 1993. A correction for allele frequency estimates derived from isofemale lines. Biochemical Genetics 31: 61-74. PubMed

Singh, R.S. and A.D. Long. 1992. Geographic variation in Drosophila: from molecules to morphology and back. Trends in Ecology and Evolution 7: 340-345. Abstract

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